Adding classifier to pretrained protein seqeunce model
13 Apr 2026 · I have a pretrained protein MLM and want to use its embeddings for a downstream classification task. What’s the …
What is the index fastq file (sample_I*.fastq.gz) generated when ...
8 Oct 2018 · What is the index fastq file that comes with some Illumina sequencing datasets? (The samplename_I*.fastq.gz file.) For …
Highly scored unanswered questions - Bioinformatics Stack Exchange
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phylogenetics - How to align output of grep --color=always? (To QC ...
Grepping out short sequences from a fasta or fastq file is a really useful way to look at sequencing data. Using the option - …
Newest 'alignment' Questions - Bioinformatics Stack Exchange
3 Jun 2025 · In seed-and-extend aligners, the initial seeding phase has a major influence on alignment quality and performance. I'm …
Parallel processing of scripts that use obitools
19 May 2017 · Bioinformatics encompasses biology, statistics, and computer science. Parallel processing is a common need in …
How to get full headers with tabs as separators with segmasker?
I try to pass a .fasta file with headers where tabs are used as separators as input file to NCBI BLAST+ segmasker: >A0A059VAR9 …
How to isolate genes from whole genomes for phylogenetic tree …
21 Aug 2019 · I have 446 whole Klebsiella Pneumoniae genomes I want to build a phylogenetic tree from. After reading about …
perl - How about BioMoose? - Bioinformatics Stack Exchange
9 May 2019 · I fear this entire thread is going to veer dangerously close to opinionation. But regardless of how one feels about the …
public databases - PANTHER FUNCTIONAL CLASSIFICATION in R ...
17 Nov 2023 · Does anyone know of a way to programmatically get panther protein class terms and IDs for a gene list, in a way that …